According to the certifications added by scuba divers on DiveBuddy.com, the following list indicates the percentage market share by each certification agency. I included all types of certifications, not just entry level certs. This data was collected from 21,273 divers.
In the following list, I counted only once per agency per diver (ie: if a diver has 3 PADI certs and 1 DAN cert, I counted 1 for PADI and 1 for DAN):
Worldwide
1. PADI: 55.6% (54.9% USA, 60.6% Outside USA)
2. SSI: 10.6% (11.4% USA, 6% Outside USA)
3. NAUI: 10.4% (11.1% USA, 6.2 Outside USA)
4. SDI: 4.5%
5. TDI: 3.0%
6. DAN: 2.4%
7. IANTD: 1.5%
8. Red Cross: 1.2%
9. CMAS/WUF: 0.9%
10. YMCA: 0.7%
11. NASE: 0.7%
12. NSS/CDS: 0.5%
13. NASDS: 0.5%
14. IDEA: 0.5%
15. Other: 6.9%
In the following list, I counted all certifications per diver (ie: using the example above, I counted 3 for PADI and 1 for DAN):
Worldwide
1. PADI: 63.0% (62.1% USA, 68.2% Outside USA)
2. SSI: 12.9% (13.7% USA, 7.6% Outside USA)
3. NAUI: 7.5% (7.9% USA, 4.9% Outside USA)
4. SDI: 3.8%
5. TDI: 2.2%
6. DAN: 1.9%
7. IANTD: 1.0%
8. Red Cross: 0.8%
9. CMAS/WUF: 0.6%
10. NASE: 0.5%
11. IDEA: 0.5%
12. YMCA: 0.4%
13. Other: 5%